Instead try parmed
Follow these steps
Source $AMBERHOME/amber.sh
Parmed <for amber14 or 12 parmed.py)
Parm xyz.prmtop
loadRestrt xyz.inpcrd
strip :WAT,Na+
parmout xyz_dry.prmtop xyz_dry.inpcrd
go
Best Regards
Elvis Martis
Ph.D. Student (Computational Chemistry)
at Bombay College of Pharmacy
A Kalina, Santacruz [E], Mumbai 400098, INDIA
W www.elvismartis.in
Skype. adrian_elvis12
-----Original Message-----
From: Saman Yousuf ali [mailto:saman.yousufali64.yahoo.com]
Sent: Tuesday, January 31, 2017 2:29 PM
To: AMBER Mailing List <amber.ambermd.org>
Subject: [AMBER] strip inpcrd
Dear all,
I want to strip water and sodium ion from inpcrd file via cpptraj. Kindly help me. _______________________________________________
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Received on Tue Jan 31 2017 - 02:00:03 PST
