Re: [AMBER] Handling modified residues

From: asdda asa <nadaafiva.gmail.com>
Date: Sat, 14 Jan 2017 20:10:59 +0800

Dear Jing,
Thanks for your help.
Can you details the steps that I should perform?
I really don't how to proceed.

Sincerely,
nadaafiva

On Sat, Jan 14, 2017 at 7:36 PM, Huang Jing <jing.huang8911.gmail.com>
wrote:

> Use antechamber to set the parameter for modified residues;
> Jing
>
> On Sat, Jan 14, 2017 at 11:12 AM, asdda asa <nadaafiva.gmail.com> wrote:
>
> > Dear Amber users,
> >
> > I am dealing with DNA topoisomerase I (pdb id 1K4T) which contain
> modified
> > residues TGP and PTR. I am not sure how to handle those two residues in
> > Leap module.
> >
> > Thanks for any help.
> >
> >
> >
> > nadaafiva
> > _______________________________________________
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> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> ----------------------
> Dr. Jing Huang
> *Institute of Chemistry and the Lise Meitner-Minerva Center for
> Computational Quantum*
> *Chemistry, Hebrew University of Jerusalem, Givat Ram Campus, Jerusalem
> 91904, Israel*
> _______________________________________________
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> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Sat Jan 14 2017 - 04:30:03 PST
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