You can use this mask
:43,45,52
Hai
> On Jan 12, 2017, at 6:51 PM, Aishani Prem <aishaniprem.gmail.com> wrote:
>
> Hi,
> I am trying to get the radius of gyration for just the hydrophobic
> residues of a beta-hairpin structure. The hydrophobic residues are residue
> number 43, 45, and 52. Right now I have a code that calculates the Radius
> of gyration for the entire structure.
> trajin pdb_gb.mdcrd
> radgyr out radgyr_backbone :42:56 .N,CA,C,O time 0.1
>
> I just want to know what is the best way to calculate the radius of
> gyration for just the hydrophobic core ?
>
> --
> Thank You and Regards,
> Aishani Chittoor Prem
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Received on Thu Jan 12 2017 - 16:00:03 PST
