Dell - Internal Use - Confidential
Thanks for your input.
I just removed the old code space and reset up from the scratch. The problem went away.
Kihoon
-----Original Message-----
From: Daniel Roe [mailto:daniel.r.roe.gmail.com]
Sent: Thursday, January 12, 2017 12:37 PM
To: AMBER Mailing List
Subject: Re: [AMBER] Issues for updating AmberTools 16 - update.14
Hi,
I'm not able to reproduce your issue, and as far as I know there have been no other reported problems with update 14 for AT16. Typically these problems occur when the source code becomes modified outside the normal automated update/patching process. Your best bet is probably to start from a clean source directory.
-Dan
On Thu, Jan 12, 2017 at 12:03 PM, wrote:
> Dell - Internal Use - Confidential
> Hi all,
>
> Have you seen this problem before? It is updated upto update.13 without a problem, but the update failed with update.14. It seems like the update python script successfully downloaded the patch and copy it to $AMBERHOME/.patches/AmberTools16_Unapplied_Patches. I tried to update by using a local mirror, but it showed the exactly identical error.
>
> It will be greatly appreciated for any input.
>
> ./update_amber --update encountered a patching error with update.14.
>
> When the update command is issued,
> ./update_amber --update returned the below.
> "
> Preparing to apply updates... please wait.
> Downloading AmberTools 16/update.14 (39.83 KB) Applying AmberTools
> 16/update.14
> PatchingError: .patches/AmberTools16_Unapplied_Patches/update.14
> failed to apply. No changes made from this patch "
>
> The system is
> OS: Red Hat Enterprise Linux Server release 7.2 (Maipo)
> Release: 7.2
> Kernel: 3.10.0-327.el7.x86_64
> Python: 2.7.13
>
> Thanks,
> Kihoon Yoon
> Systems Principal Engineer
> Dell | High Performance Computing
> office +1 512 728 4191
> mobile +1 832 955 5598
> Kihoon.Yoon.Dell.com
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
--
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Jan 12 2017 - 11:30:03 PST
