Re: [AMBER] how to use depreciated cpptraj code

From: Hai Nguyen <>
Date: Mon, 2 Jan 2017 14:33:16 -0500


can you try to add keyword "mindist" to nativecontacts?

You can see an example here:


On Mon, Jan 2, 2017 at 2:21 PM, Chris Neale <> wrote:

> Dear Users:
> I see that there was once a cpptraj command called mindist, that would
> return the minimum inter-atom distance between two selection masks.
> I am most familiar with the term "depreciated" in computer code meaning it
> is not recommended, but can still be used (whereas something like "removed"
> might be used if the command was no longer available).
> However, I can not figure out how to use any depreciated commands in
> cpptraj, which is my main question here. The amber16 manual does not turn
> up anything about how to do this with a search for the word depreciated.
> I do see that the cpptraj executable recommends to use the nativecontacts
> command. However, as far as I can tell this does not give minimum distances
> but, rather, the number of inter-group contacts within a specified cutoff.
> Thank you,
> Chris.
> _______________________________________________
> AMBER mailing list
AMBER mailing list
Received on Mon Jan 02 2017 - 12:00:02 PST
Custom Search