The 'minimage' command of cpptraj will calculate the minimum non-self
imaged distance between atoms. See the manual for details.
-Dan
On Tue, Dec 13, 2016 at 8:39 AM, A kS <aks25121986.gmail.com> wrote:
> Dear AMBER users,
>
> I am a new user of AMBER. It will be great if anyone could give me an idea
> about how can I calculate the minimum distance between images of solute
> during the simulation.
>
> If such calculation is possible then can I use autoimaged trajectory for
> this?
>
> Looking forward for your reply.
>
> Regards
> _______________________________________________
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
--
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Tue Dec 13 2016 - 06:00:04 PST
