Sorry, got sent.
HETATM 489 N1 SPM A 26 15.754 28.140 88.337 1.00 17.38
N
and that I need to load a new library, but which one?
This is my code
source leaprc.ff14SB
source leaprc.water.tip3p
loadAmberParams frcmod.ionsjc_tip3p
dna1= loadpdb "nuc.pdb"
saveAmberParm dna1 dnainvacuum.prmtop dnainvacuum.inpcrd
addions dna1 Na+ 0
saveamberparm dna1 dnaneutral.prmtop dnaneutral.inpcrd
dna2=copy dna1
solvatebox dna1 TIP3PBOX 10.0
edit dna2
saveamberparm dna2 dnainwater.prmtop dnainwater.inpcrd
Quit
On Mon, Dec 12, 2016 at 4:52 PM, The Cromicus Productions <
thecromicusproductions.gmail.com> wrote:
> Hi everyone,
>
> I'm trying to solvate the molecule 1S2R in tLeap but I'm getting the
> following errors:
> FATAL: Atom .R<SPM 25>.A<N1 1> does not have a type.
> and others just like that one. I believe it is due to the atoms
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Dec 12 2016 - 14:00:03 PST
