Hi Abhi,
It is possible to do that. Check $AMBERHOME/test/amd/rna_gb/ directory, there are examples there.
Kind regards,
Pengfei
> On Nov 22, 2016, at 2:51 PM, Thakur, Abhishek <axt651.miami.edu> wrote:
>
> Hi
>
> I am doing calculations in implicit water model, I want to know it is possible to run aMD with this implicit water model?
>
> If yes then how do I calculate the parameters for aMD? Will running simple production run explicitly and putting that value in it justify the calculations?
>
>
> Kindly suggest me how do I justify my calculation by this method.
>
>
>
> Thanking you,
>
> Abhishek
> ____________
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Nov 22 2016 - 13:00:02 PST
