Hi everyone,
Is there any way of converting prm files into prmtop?
A colleague of mine works in NAMD and he gave me a bunch
of simulations of which I want to get the pdb file associated to the
final screenshot. I have the dcd files (Which I convert to mdcrd and
then I save the final screenshot as a .rst file) and then the prm files
(which I guess I should convert to prmtop).
My idea was to use a command as in the tutorial:
$AMBERHOME/bin/ambpdb -p polyAT_vac.prmtop < polyAT_gb_init_min.rst >
polyAT_gb_init_min.pdb
but I have a bunch of prm files
par_all36_carb.prm
par_all36_cgenff.prm
par_all36_lipid.prm
par_all36_na.prm
par_all36_prot.prm
Is there any way to work with this?
Thanks a lot!
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Received on Mon Nov 21 2016 - 11:30:04 PST
