Dear Amber User's
I am trying to calculate hbond life time in AmberTools 16.0
hbond WAT_WAT out hbond.dat acceptormask :SPC donormask :SPC.O angle 135.0
dist 3.5 \
nointramol avgout wat_avg.dat series
run
writedata series-hbond.dat *[solutehb]
lifetime *[solutehb] out hbond_lifetime.out cut 0.1
So after running lifetime command it generates very large no of dataset
(may be equal to total no of bond pairs, I didn't counted).
In my case the lifetime out file give total 831969 curve. while I want
only lifetime between two pairs without any resid dataset information in
single average curve.
So how to proceed with that.
Thanks & regards
Rahman
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*M*d* H*omaidur* R**ahman *( Research Scholar )
Lab No. 510, Computational Biophysics Lab.
Department of Biotechnology
Indian Institute of Technology-Madras
Chennai-600 036, India
*Mobile No = +91- 7845991785*
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Received on Mon Nov 21 2016 - 11:30:03 PST
