Re: [AMBER] dlpc membrane

From: Batuhan Kav <>
Date: Mon, 14 Nov 2016 11:36:05 +0100

Dear Balazs,

You load the pdb file into "lipid" variable and then trying to set the
box size and save the parameters for "system" variable. "System" should
be "lipid".



On 11/14/2016 10:45 AM, wrote:
> Dear Users,
> I planned to running an MD for DLPC (128) bilayer.
> The structure was prepared by charmmgui, and the pdb file obtained was
> convert by
> Using the attached tleap file (only lipid) I was not able to generate
> the parm7 and rst7 files.
> For other lipid types the generation was successful.
> I checked the /opt/amber16/dat/leap/lib/lipid14.dat file but I didn't
> see any possible error between the naming scheme, maybe I missed
> something.
> What could be the problem, and how can i solve this problem?
> Thank you for your help.
> Balazs
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Received on Mon Nov 14 2016 - 03:00:03 PST
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