Re: [AMBER] Generation of parameter files of transmembrane protein system via xleap

From: Bill Ross <>
Date: Mon, 14 Nov 2016 01:21:21 -0800

Have you looked at it visually in xleap?

Are terminal atoms the problem, or is it deeper?


On 11/14/16 1:05 AM, Mahrukh Imtiaz wrote:
> Hi,
> I am trying to generate parameter files for transmembrane protein system via xleap but I am facing some issues. When I give the command of saveamberparm to generate prmtop and inpcrd fis, it generates the files but the structure of lipid gets a little distorted. It would be a great help if anyone could guide me where am I making mistake.
> Regards,
> Mahrukh ImtiazCOMSATS Institute of Information TechnologyIslamabad
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Received on Mon Nov 14 2016 - 01:30:03 PST
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