[AMBER] Generation of parameter files of transmembrane protein system via xleap

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From: Mahrukh Imtiaz <mahrukhimtiaz92.yahoo.com>
Date: Mon, 14 Nov 2016 09:05:39 +0000 (UTC)

Hi,
I am trying to generate parameter files for transmembrane protein system via xleap but I am facing some issues. When I give the command of saveamberparm to generate prmtop and inpcrd fis, it generates the files but the structure of lipid gets a little distorted. It would be a great help if anyone could guide me where am I making mistake.
Regards,
Mahrukh ImtiazCOMSATS Institute of Information TechnologyIslamabad
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Received on Mon Nov 14 2016 - 01:30:02 PST