The residue name is correct.
I have a ZhA: alpha-L-Rha 2,3OMe.
2016-10-21 16:42 GMT+02:00 Elvis Martis <elvis_bcp.elvismartis.in>:
> Hi,
> Please check the residue name for your structure, and check the equivalent
> name in the GLYCAM atom name list.
> For example, for residue name "4GA" check the legal atom names.
>
> Regards
>
> *Elvis Martis* PhD Student, Bombay College of Pharmacy
> [image: photo] Email: elvis_bcp.elvismartis.in <elvis_bcp.elvismartis.in>
> Website: http://www.elvismartis.in <http://www.elvismartis.in/>
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> Address: Kalina, Santa Cruz [E]
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>
>
> On 21 October 2016 at 19:56, Imma Speciale <i.spec88.gmail.com> wrote:
>
> > Dear all,
> >
> > I have builded an olygosaccharide with GLYCAM-Web in order to open it
> with
> > Xleap, because this program generates a file pdb that Xleap usually open.
> > In my case, this is not true.
> >
> > I have added in the file pdb the flag TER, to indicate the branching and
> I
> > have opened it in Xleap after loading *leaprc.GLYCAM_06h*, but the
> program
> > closes abnormally and in the terminal results the following message:
> >
> > ------------------------------------------------------------
> > ---------------------------------------------------------------------
> >
> > !FATAL ERROR----------------------------------------
> >
> > !FATAL: In file [chirality.c], line 142
> >
> > !FATAL: Message: Atom named CH3 from MEX did not match !
> >
> > !
> >
> > !ABORTING.
> >
> > ------------------------------------------------------------
> > --------------------------------------------------------------------
> >
> > Thus I have loaded another library *leaprc.**GLYCAM_06j-1 *(the same
> > library used by GLYCAM-WEB to generate the oligosaccharide), but the
> result
> > is the same!!
> >
> > Xleap doesn't recognize the flag MEX.
> >
> > Does anyone know how to fix this?
> >
> > Thank you
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Received on Fri Oct 21 2016 - 08:00:03 PDT
