[AMBER] uneven bond formed after cyclization of peptide

Contemporary messages sorted: [ by date ] [ by thread ] [ by subject ] [ by author ] [ by messages with attachments ]

From: Thakur, Abhishek <axt651.miami.edu>
Date: Thu, 20 Oct 2016 23:32:57 +0000

Hi

I am trying to cyclize my peptide by making bond between N Glu terminal and C SER terminal.

But the bond formed seems to be quiet weird.

Can anyone suggest me what should I do .

Thanking you,

Abhishek

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber

chemical/x-pdb attachment: pep.pdb

Received on Thu Oct 20 2016 - 17:00:02 PDT