Re: [AMBER] Analysis of results

From: Stacyann Nelson <>
Date: Mon, 17 Oct 2016 16:17:39 +0000 (UTC)

Hi David,
This is the output of which process_mdout.perl/opt/amber/bin/process_mdout.perl

Thank you David. I run the process_mdout.perl  and it worked. 
Thank you. 


    On Monday, October 17, 2016 12:01 PM, David A Case <> wrote:

 On Mon, Oct 17, 2016, Stacyann Nelson wrote:

> 2. When you say "I searched the bin", *exactly* which directory did you
> search?-  I was looking for the process_mdout.perl script was in my path. 

You and I have different interpretations of what the word "exactly" means  :-)
Please do this:

    cd /opt/amber
    ls proc*

Also, please report (again?) the output of typing "which process_mdout.perl".

However, everything you report looks fine, so it is unclear why you can't run
process_mdout.perl.  But don't let this stop you!  All that script does is to
re-format some of the data that is in the mdout file.  You can just look at
the contents of your mdout file instead.


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