Dear amber users,
I am using ambertools 14.
I want to convert prmtop and inpcrd file (created using antechamber) to
gromacs files using amb2gmx.pl.
When I use command:./amb2gmx.pl --prmtop lig.prmtop -crd lig.inpcrd
-outname lig, I encontered with:
----------------------------------------------------------------
| New format PARM file being parsed.
| Version = 1.000 Date = 10/11/16 Time = 23:50:45
sh: rdparm: command not found
Parsing PDB file lig.pdb...
found:
1 protein residues
0 sodium ions
0 chloride ions
0 waters
1 TOTAL residues read
Reading prmtop file...
47 atom type indices read.
found:
0 atoms
0 bonds
0 angles
0 torsions
Error: pdb and rdparm disagree on number of atoms!
----------------------------------------------------------------
How to resolve this problem?
Any help will highly be appreciated.
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Received on Tue Oct 11 2016 - 10:00:02 PDT
