Note you can download and build AmberTools 16 for free, which gives you
all you need to get your feet wet.
Bill
On 9/28/16 11:47 PM, Bill Ross wrote:
> One option would be to learn how to use the Amber programs to do the
> simulation. I suggest looking over the tutorials to see what may apply.
>
> Bill
>
>
> On 9/28/16 10:46 PM, ruqaiya khalil wrote:
>> Dear All,
>>
>> I want to simulate a protein with FMN (oxidized) as co-factor. I found the
>> parameters in the AMBER parameter database. The available file formats are
>> OFF file and FRCFLD.
>> I could not find any information about using them. I wonder if anyone can
>> tell me how to use these formats.
>>
>>
>> Best,
>>
>> Ruqaiya
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>
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Received on Thu Sep 29 2016 - 01:00:02 PDT
