[AMBER] about lipids retrain

From: Albert <mailmd2011.gmail.com>
Date: Wed, 17 Aug 2016 11:45:19 +0200


I've got a question about the lipids restrain in the tutorial. I found
the following section:

Hold lipid fixed
10.0 ! Force constant (kcal/(mol Angstroms^2))
RES 1 384 ! Choose residues

In the lipids simulation tutorial.

I am just wondering does it restrain all the atoms of lipids or just the
head group? If my lipids is in the range of 200-300 whereas my protein
is 100-199, I specified RES as: 1:300. Will all the atoms of my protein
also be restrained?

thx a lot

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Received on Wed Aug 17 2016 - 03:00:03 PDT
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