Hi Hai:
Thanks a lot for the suggestions.
It finally works great.
have a nice weekend.
ALbert
On 07/30/2016 10:11 AM, Hai Nguyen wrote:
> On Sat, Jul 30, 2016 at 3:59 AM, Albert<mailmd2011.gmail.com> wrote:
>
>> >Hi:
>> >
>> >thanks a lot for the comments.
>> >
>> >I went through the manual on page 26, and I installed miniconda in
>> >
>> >/home/albert/install/amber16/lib/python2.7/site-packages/
>> >
> before I compile Amber and made links at:
>> >
>> >/home/albert/install/amber16/miniconda
>> >
> This is not a correct way to install miniconda.
> Normally if user's Python does not have some Python package requirement
> (e.g numpy, matplotlib ...), amber will ask you to install miniconda and
> amber will*automatically* do that for you (if you say YES). if your Python
> distribution have all the requirements, amber does not need to install
> miniconda.
>
>
>> >
>> >However, after make install Amber, I still cannot find amber.conda or
>> >amber.jupyter....
>> >
>> >
> Can you try to manually install miniconda by following:
>
> cd $AMBERHOME
>
> # below will properly set correct namespace for you. Please look at very
> end of this configure_python file
> # you will see something like: ln -sf ../miniconda/bin/jupyter amber.jupyter
> || error "Linking Amber's Miniconda jupyter"
>
> bash ./AmberTools/src/configure_python
>
> # reconfigure
> ./configure gnu
>
> make install
>
> Hai
>
>
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Received on Sat Jul 30 2016 - 02:00:02 PDT
