Look at the manual flag "jar" and also look at some tests under jar in
the test dir for the amber installation. That should get you some ideas.
adrian
On 7/24/16 6:25 PM, Ibrahim Said wrote:
> Dear Amber Users
> I am planning to study the mechanical properties of a protein with steered
> molecular simulation but unfortunately I can not find a protocol for amber.
> Also, I can not find the position of the constant velocity in the namelist.
>
> Please, any help is appreciated.
>
> thank you
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
--
Dr. Adrian E. Roitberg
University of Florida Research Foundation Professor.
Department of Chemistry
University of Florida
roitberg.ufl.edu
352-392-6972
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Received on Sun Jul 24 2016 - 11:00:02 PDT
