Re: [AMBER] SMD simulation protocols

From: Adrian Roitberg <>
Date: Sun, 24 Jul 2016 19:35:50 +0200

Look at the manual flag "jar" and also look at some tests under jar in
the test dir for the amber installation. That should get you some ideas.


On 7/24/16 6:25 PM, Ibrahim Said wrote:
> Dear Amber Users
> I am planning to study the mechanical properties of a protein with steered
> molecular simulation but unfortunately I can not find a protocol for amber.
> Also, I can not find the position of the constant velocity in the namelist.
> Please, any help is appreciated.
> thank you
> _______________________________________________
> AMBER mailing list

Dr. Adrian E. Roitberg
University of Florida Research Foundation Professor.
Department of Chemistry
University of Florida
AMBER mailing list
Received on Sun Jul 24 2016 - 11:00:02 PDT
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