Hi, everyone,
I want to calculate the hydrophobic surface which exposed to the
solvent of a protein and using the surf or the molsurf command in cpptraj.
The command is here:
surf :ALA,VAL,LEU,ILE,PRO,PHE,TRP,MET out XXX.out
However, I wonder that is the surf or the molsurf calculate the surface
exposed to the solvent of a protein, or the command just culculate the area
of each residue surface and then sum up？
Best wishes.
Chen.
PS: I found the mail of 163.com cannot receive the reply of the question,
so I change to the gmail. This may disrupts
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Received on Tue Jul 19 2016 - 20:00:02 PDT
