[AMBER] Is the surf or the molsurf calculate the protein surface?

Contemporary messages sorted: [ by date ] [ by thread ] [ by subject ] [ by author ] [ by messages with attachments ]

From: windy <chxp_moon.163.com>
Date: Thu, 14 Jul 2016 16:44:08 +0800 (CST)

Hi, everyone,

    I want to calculate the hydrophobic surface which exposed to the solvent of a protein and using the surf or the molsurf command in cpptraj. The command is here:

   surf :ALA,VAL,LEU,ILE,PRO,PHE,TRP,MET out XXX.out

   However, I wonder that is the surf or the molsurf calculate the surface exposed to the solvent of a protein, or the command just culculate the area of each residue surface and then sum up？

   Best wishes.

                                                                                     Chen.

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Jul 14 2016 - 02:00:02 PDT