On Fri, Jul 08, 2016, Slava Chushak wrote:
> I want to make some basepairs as you did in program_8.nab for RNA.
> I'm using:
> setboundsfromdb(b, m, "1:9:", "1:33:", "adna.basepair.db", 1.0);
>
> and I'm getting:
> setboundsfromdb: adna.basepair.db, 1:9: -> 1:33: (DT -> DA)
> setboundsfromdb: Couldn't find entry for D:P-D:P in adna.basepair.db: 1:9:P 1:33:P
Please try the attached patch (similar to the last one). Do this
cd $AMBEHROME
patch -p0 < setbounds.patch
...thanks for the report....dac
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jul 08 2016 - 13:30:03 PDT