Re: [AMBER] Library errors while using NAB on Amber16

From: David A Case <david.case.rutgers.edu>
Date: Fri, 8 Jul 2016 16:22:49 -0400

On Fri, Jul 08, 2016, Slava Chushak wrote:

> I want to make some basepairs as you did in program_8.nab for RNA.
> I'm using:
> setboundsfromdb(b, m, "1:9:", "1:33:", "adna.basepair.db", 1.0);
>
> and I'm getting:
> setboundsfromdb: adna.basepair.db, 1:9: -> 1:33: (DT -> DA)
> setboundsfromdb: Couldn't find entry for D:P-D:P in adna.basepair.db: 1:9:P 1:33:P

Please try the attached patch (similar to the last one). Do this

cd $AMBEHROME
patch -p0 < setbounds.patch

...thanks for the report....dac



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Received on Fri Jul 08 2016 - 13:30:03 PDT
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