Re: [AMBER] Library errors while using NAB on Amber16

From: Slava Chushak <chushak.yahoo.com>
Date: Mon, 11 Jul 2016 14:22:52 +0000 (UTC)

It works now. Thanks.

Slava Chushak

--------------------------------------------
On Fri, 7/8/16, David A Case <david.case.rutgers.edu> wrote:

 Subject: Re: [AMBER] Library errors while using NAB on Amber16
 To: "Slava Chushak" <chushak.yahoo.com>, "AMBER Mailing List" <amber.ambermd.org>
 Date: Friday, July 8, 2016, 4:22 PM
 
 On Fri, Jul 08, 2016,
 Slava Chushak wrote:
 
> I
 want to make some basepairs as you did in program_8.nab for
 RNA.
> I'm using:
> setboundsfromdb(b, m, "1:9:",
 "1:33:", "adna.basepair.db", 1.0);
>
> and I'm
 getting:
> setboundsfromdb:
 adna.basepair.db, 1:9: -> 1:33: (DT -> DA)
> setboundsfromdb: Couldn't find entry
 for D:P-D:P in adna.basepair.db: 1:9:P 1:33:P
 
 Please try the attached patch
 (similar to the last one).  Do this
 
 cd $AMBEHROME
 patch -p0 <
 setbounds.patch
 
 ...thanks
 for the report....dac
 

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Received on Mon Jul 11 2016 - 07:30:03 PDT
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