hi,
You need to download NMA_skeleton.pdb to your computer. There is a link in
the webpage: http://ambermd.org/tutorials/advanced/tutorial2/section1.htm
Also, in that page, change
$AMBERHOME/bin/xleap -s -f $AMBERHOME/dat/leap/cmd/leaprc.ff14SB
to
$AMBERHOME/bin/xleap -s -f $AMBERHOME/dat/leap/cmd/leaprc.protein.ff14SB
Hai
On Wed, Jul 6, 2016 at 5:07 PM, Corum, Katharine W <
katharine-corum.uiowa.edu> wrote:
> Hi! I am new to Amber. I have just installed Amber16. Are there any
> tutorials that work for Amber16? I have been trying to do tutorials but
> keep getting stuck since they are only updated for Amber15. I am interested
> in all tutorials, especially QM/MM ones.
>
>
> I would love to do this tutorial but I keep getting a message saying there
> is no NMA_skeleton.pdb file. Any help would be greatly appreciated!
>
>
> Thanks!
>
> Katie
>
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Received on Wed Jul 06 2016 - 14:30:04 PDT
