[AMBER] Help: make test fails during parallel amber installation

From: Dr. M. K. Yadav <manojiids.gmail.com>
Date: Fri, 1 Jul 2016 09:22:03 +0530

Dear Friend,

I am trying to install AmberTools15 and amber14 on my Hp-Pavillion DV4
Installation is successful but make test command is giving lots of errors.
I am giving here exact instruction I have used for installation and also
enclosing the log file. Please save me ...


   Extract AmberTool15 and Amber14 in “Home/manojiids/” folder

   Now user folder i.e. manojiids contains two file viz. amber14 and
   amber14 (2)

   Next, set AMBERHOME environment variable: export
   AMBERHOME=/home/manojiids/amber14 (in home/.bashrc file using gedit)

   install some compilers and other libraries. sudo apt-get install csh
   flex gfortran g++ xorg-dev \ zlib1g-dev libbz2-dev patch python-tk

   ./configure -mpi gnu

   source /home/manojiids/amber14/amber.sh

   test -f /home/manojiids/amber14/amber.sh && source

   make install

   export DO_PARALLEL=”mpirun -np 4”

   make test

   Test fails then try this

   extract Openmpi-1.10.3 file in amber14>AmberTools>src

   Now change the mpi version in configure_openmpi file and

   ./configure openmpi gnu


   export DO_PARALLEL=”mpirun -np 4”

      make test

* ------ With Regards ------- Dr. Manoj K. Yadav*
   (PhD Bioinformatics, F.S.L.Sc.)
    Assistant Professor
 Medical Biotechnology
Department of Biochemistry,
Pt. J.N.M. Medical College,
    Raipur (C.G.)-INDIA
    +91 7581911917
    +91 8004356248

"Until you spread your wings, you'll have no idea how far you can fly"

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Received on Thu Jun 30 2016 - 21:00:03 PDT
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