Dear Friend,
I am trying to install AmberTools15 and amber14 on my Hp-Pavillion DV4
laptop.
Installation is successful but make test command is giving lots of errors.
I am giving here exact instruction I have used for installation and also
enclosing the log file. Please save me ...
1.
Extract AmberTool15 and Amber14 in “Home/manojiids/” folder
2.
Now user folder i.e. manojiids contains two file viz. amber14 and
amber14 (2)
3.
Next, set AMBERHOME environment variable: export
AMBERHOME=/home/manojiids/amber14 (in home/.bashrc file using gedit)
4.
install some compilers and other libraries. sudo apt-get install csh
flex gfortran g++ xorg-dev \ zlib1g-dev libbz2-dev patch python-tk
python-matplotlib
5.
./configure -mpi gnu
6.
source /home/manojiids/amber14/amber.sh
test -f /home/manojiids/amber14/amber.sh && source
/home/manojiids/amber14/amber.sh
7.
make install
8.
export DO_PARALLEL=”mpirun -np 4”
9.
make test
10.
Test fails then try this
extract Openmpi-1.10.3 file in amber14>AmberTools>src
Now change the mpi version in configure_openmpi file and
./configure openmpi gnu
11.
Next,
export DO_PARALLEL=”mpirun -np 4”
make test
* ------ With Regards ------- Dr. Manoj K. Yadav*
(PhD Bioinformatics, F.S.L.Sc.)
Assistant Professor
Medical Biotechnology
Department of Biochemistry,
Pt. J.N.M. Medical College,
Raipur (C.G.)-INDIA
+91 7581911917
+91 8004356248
"Until you spread your wings, you'll have no idea how far you can fly"
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Received on Thu Jun 30 2016 - 21:00:03 PDT
