make[2]: Entering directory '/home/manojiids/amber14/test' export TESTsander='../../bin/pmemd.MPI'; cd 4096wat && ./Run.pure_wat -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.pure_wat: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd 4096wat && ./Run.pure_wat_nmr_temp_reg -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.pure_wat_nmr_temp_reg: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd 4096wat && ./Run.vrand -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.vrand: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd 4096wat && ./Run.frcdmp -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.frcdmp: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd 4096wat_oct && ./Run.pure_wat_oct -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.pure_wat_oct: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd alp && ./Run.alp -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.alp: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd cytosine && ./Run.cytosine -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.cytosine: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd dhfr && ./Run.dhfr -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.dhfr: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd dhfr && ./Run.dhfr.min -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.dhfr.min: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd dhfr && ./Run.dhfr.noshake -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.dhfr.noshake: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd ff14ipq && ./Run.ff14ipq -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.ff14ipq: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd variable_14 && ./Run.variable_14_ntb1 -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.variable_14_ntb1: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd trx && ./Run.trx -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.trx: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd trx && ./Run.trx.cpln.pmemd -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.trx.cpln.pmemd: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.gbrna: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna.min -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.gbrna.min: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna.ln -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.gbrna.ln: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd circ_dna && ./Run.circdna -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.circdna: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb2_trx && ./Run.trxox.nogbsa -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.trxox.nogbsa: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb7_trx && ./Run.trxox_md -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.trxox_md: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb8_trx && ./Run.trxox -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.trxox: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb8_trx && ./Run.trxox_md && ./Run.trxox_md prmtop_an -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.trxox_md: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gbneck2nu_test && ./Run.1hji_md -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.1hji_md: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd alpb_trx && ./Run.trxox.nogbsa -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.trxox.nogbsa: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb1_cox2 && ./Run.cox2 -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.cox2: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gbsa_xfin && ./Run.gbsa -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.gbsa: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd tip4p && ./Run.tip4p -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.tip4p: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd tip4p && ./Run.tip4p_mcbar -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.tip4p_mcbar: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd tip4p && ./Run.tip4p_nve -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.tip4p_nve: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd tip5p && ./Run.tip5p -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.tip5p: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd tip5p && ./Run.tip5p_nve -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.tip5p_nve: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd cnstph/implicit && ./Run.cnstph -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.cnstph: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd cnstph/explicit && ./Run.cnstph -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.cnstph: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr && ./Run.dhfr_charmm.min -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.dhfr_charmm.min: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr && ./Run.dhfr_charmm.md -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.dhfr_charmm.md: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap && ./Run.dhfr_charmm.md -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.dhfr_charmm.md: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm_noshake.min -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.dhfr_cmap_pbc_charmm_noshake.min: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm_noshake.md -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.dhfr_cmap_pbc_charmm_noshake.md: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm.min -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.dhfr_cmap_pbc_charmm.min: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm.md -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.dhfr_cmap_pbc_charmm.md: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd amd && make -k test OPT=pmemd make[3]: Entering directory '/home/manojiids/amber14/test/amd' Testing AMD with PME -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.pme.amd1: Program error Makefile:6: recipe for target 'pme' failed make[3]: [pme] Error 1 (ignored) -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.pme.amd2: Program error Makefile:6: recipe for target 'pme' failed make[3]: [pme] Error 1 (ignored) -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.pme.amd3: Program error Makefile:6: recipe for target 'pme' failed make[3]: [pme] Error 1 (ignored) Testing AMD with IPS -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.ips.amd1: Program error Makefile:12: recipe for target 'ips' failed make[3]: [ips] Error 1 (ignored) -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.ips.amd2: Program error Makefile:12: recipe for target 'ips' failed make[3]: [ips] Error 1 (ignored) -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.ips.amd3: Program error Makefile:12: recipe for target 'ips' failed make[3]: [ips] Error 1 (ignored) Testing AMD with GB -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.gb.amd1: Program error Makefile:18: recipe for target 'gb' failed make[3]: [gb] Error 1 (ignored) -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.gb.amd2: Program error Makefile:18: recipe for target 'gb' failed make[3]: [gb] Error 1 (ignored) -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.gb.amd3: Program error Makefile:18: recipe for target 'gb' failed make[3]: [gb] Error 1 (ignored) make[3]: Leaving directory '/home/manojiids/amber14/test/amd' export TESTsander='../../bin/pmemd.MPI'; cd scaledMD && make -k test OPT=pmemd make[3]: Entering directory '/home/manojiids/amber14/test/scaledMD' Testing scaledMD with PME -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.scaledMD: Program error Makefile:6: recipe for target 'pme' failed make[3]: *** [pme] Error 1 make[3]: Target 'test' not remade because of errors. make[3]: Leaving directory '/home/manojiids/amber14/test/scaledMD' Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 2 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gact_ips && ./Run.ips -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.ips: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd csurften && ./Run.csurften_z-dir -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.csurften_z-dir: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd lj_12-6-4 && ./Run.12-6-4 -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.12-6-4: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd csurften && ./Run.csurften_z-dir_npt_3 -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.csurften_z-dir_npt_3: Program error Makefile:998: recipe for target 'test.parallel.pmemd.basic' failed make[2]: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd nmropt && make pmemd_compat make[3]: Entering directory '/home/manojiids/amber14/test/nmropt' cd gb/angle && ./Run.nmropt_1angle_gb -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.nmropt_1angle_gb: Program error Makefile:13: recipe for target 'pmemd_compat_gb' failed make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/distance && ./Run.dist_gb -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.dist_gb: Program error Makefile:13: recipe for target 'pmemd_compat_gb' failed make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/distance_COM && ./Run.distCOM_gb -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.distCOM_gb: Program error Makefile:13: recipe for target 'pmemd_compat_gb' failed make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/jar_distance && ./Run.jar_gb -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.jar_gb: Program error Makefile:13: recipe for target 'pmemd_compat_gb' failed make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/jar_distance_COM && ./Run.jar_gb -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.jar_gb: Program error Makefile:13: recipe for target 'pmemd_compat_gb' failed make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/jar_torsion && ./Run.jar_torsion -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.jar_torsion: Program error Makefile:13: recipe for target 'pmemd_compat_gb' failed make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/nmropt_1_torsion && ./Run.nmropt_1_torsion -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.nmropt_1_torsion: Program error Makefile:13: recipe for target 'pmemd_compat_gb' failed make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/tautp && ./Run.nmropt_1tautp_gb -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.nmropt_1tautp_gb: Program error Makefile:13: recipe for target 'pmemd_compat_gb' failed make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/temp && ./Run.nmropt_1temp_gb -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.nmropt_1temp_gb: Program error Makefile:13: recipe for target 'pmemd_compat_gb' failed make[3]: [pmemd_compat_gb] Error 1 (ignored) cd pme/angle && ./Run.nmropt_1angle_pbc -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.nmropt_1angle_pbc: Program error Makefile:33: recipe for target 'pmemd_compat_pme' failed make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/distance && ./Run.dist_pbc -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.dist_pbc: Program error Makefile:33: recipe for target 'pmemd_compat_pme' failed make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/distance_COM && ./Run.distCOM_pbc -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.distCOM_pbc: Program error Makefile:33: recipe for target 'pmemd_compat_pme' failed make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/jar_torsion && ./Run.jar_torsion -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.jar_torsion: Program error Makefile:33: recipe for target 'pmemd_compat_pme' failed make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/jar_distance && ./Run.jar_pbc -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.jar_pbc: Program error Makefile:33: recipe for target 'pmemd_compat_pme' failed make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/jar_distance_COM && ./Run.jar_pbc -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.jar_pbc: Program error Makefile:33: recipe for target 'pmemd_compat_pme' failed make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/nmropt_1_torsion && ./Run.nmropt_1_torsion -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.nmropt_1_torsion: Program error Makefile:33: recipe for target 'pmemd_compat_pme' failed make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/tautp && ./Run.nmropt_1tautp_pbc -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.nmropt_1tautp_pbc: Program error Makefile:33: recipe for target 'pmemd_compat_pme' failed make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/temp && ./Run.nmropt_1temp_pbc -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.nmropt_1temp_pbc: Program error Makefile:33: recipe for target 'pmemd_compat_pme' failed make[3]: [pmemd_compat_pme] Error 1 (ignored) make[3]: Leaving directory '/home/manojiids/amber14/test/nmropt' export TESTsander='../../../bin/pmemd.MPI'; cd netcdf && make -k test OPT=/home/manojiids/amber14/include/netcdf.mod make[3]: Entering directory '/home/manojiids/amber14/test/netcdf' Netcdf MD Restart Write Test -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./runmd.sh: Program error Makefile:6: recipe for target 'mdrstwrite' failed make[3]: [mdrstwrite] Error 1 (ignored) Netcdf Minimization Restart Write Test -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./runmin.sh: Program error Makefile:9: recipe for target 'minrstwrite' failed make[3]: [minrstwrite] Error 1 (ignored) Restrained MD with netcdf Restart Reference Coords Test -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./runmd.sh: Program error Makefile:12: recipe for target 'ncrefmd' failed make[3]: [ncrefmd] Error 1 (ignored) Netcdf MD restart read test, ntx=5 -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./runmd.sh: Program error Makefile:15: recipe for target 'ntx5' failed make[3]: [ntx5] Error 1 (ignored) Netcdf MD restart read test, ntx=1 -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./runmd.sh: Program error Makefile:18: recipe for target 'ntx1' failed make[3]: [ntx1] Error 1 (ignored) make[3]: Leaving directory '/home/manojiids/amber14/test/netcdf' export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/campTI && ./Run.campTI -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.campTI: Program error Makefile:1138: recipe for target 'test.parallel.pmemd.TI' failed make[2]: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/pheMTI && ./Run.0 -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.0: Program error Makefile:1138: recipe for target 'test.parallel.pmemd.TI' failed make[2]: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/pheMTI && ./Run.1 -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.1: Program error Makefile:1138: recipe for target 'test.parallel.pmemd.TI' failed make[2]: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/pheMTI && ./Run.lambda0 -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.lambda0: Program error Makefile:1138: recipe for target 'test.parallel.pmemd.TI' failed make[2]: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/pheMTI && ./Run.lambda1 -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.lambda1: Program error Makefile:1138: recipe for target 'test.parallel.pmemd.TI' failed make[2]: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/sodium && ./Run.sodium -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.sodium: Program error Makefile:1138: recipe for target 'test.parallel.pmemd.TI' failed make[2]: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/ti_ggcc && ./Run.test1 -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.test1: Program error Makefile:1138: recipe for target 'test.parallel.pmemd.TI' failed make[2]: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/ti_ggcc && ./Run.test2 -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.test2: Program error Makefile:1138: recipe for target 'test.parallel.pmemd.TI' failed make[2]: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd pmemdTI/softcore && ./Run_sc Running the Softcore potential tests ============================================================== Minimization test -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.min: Program error Protein-Ligand complex test -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.complex: Program error ============================================================== Solvation free energy test -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.toluene: Program error -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.toluene2: Program error ============================================================== Dynamic lambda test -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.dynlmb: Program error ============================================================== Restrained complex test -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.complex_rst: Program error ============================================================== Using softcore electrostatics -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.ethanol: Program error ============================================================== Soft core test suite complete ============================================================== export TESTsander='../../bin/pmemd.amoeba.MPI'; cd amoeba_wat1 && ./Run.amoeba_wat1.pmemd -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.amoeba_wat1.pmemd: Program error Makefile:1196: recipe for target 'test.pmemd.amoeba.MPI' failed make[2]: [test.pmemd.amoeba.MPI] Error 1 (ignored) export TESTsander='../../bin/pmemd.amoeba.MPI'; cd amoeba_wat2 && ./Run.amoeba_wat2.pmemd -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.amoeba_wat2.pmemd: Program error Makefile:1196: recipe for target 'test.pmemd.amoeba.MPI' failed make[2]: [test.pmemd.amoeba.MPI] Error 1 (ignored) export TESTsander='../../bin/pmemd.amoeba.MPI'; cd amoeba_wat2 && ./Run.ntpverlet.pmemd -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.ntpverlet.pmemd: Program error Makefile:1196: recipe for target 'test.pmemd.amoeba.MPI' failed make[2]: [test.pmemd.amoeba.MPI] Error 1 (ignored) export TESTsander='../../bin/pmemd.amoeba.MPI'; cd amoeba_gb1 && ./Run.amoeba_gb1.pmemd -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.amoeba_gb1.pmemd: Program error Makefile:1196: recipe for target 'test.pmemd.amoeba.MPI' failed make[2]: [test.pmemd.amoeba.MPI] Error 1 (ignored) export TESTsander='../../bin/pmemd.amoeba.MPI'; cd amoeba_jac && ./Run.amoeba_jac.pmemd -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.amoeba_jac.pmemd: Program error Makefile:1196: recipe for target 'test.pmemd.amoeba.MPI' failed make[2]: [test.pmemd.amoeba.MPI] Error 1 (ignored) export TESTsander='../../bin/pmemd.amoeba.MPI'; cd amoeba_formbox && ./Run.amoeba_formbox.pmemd -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.amoeba_formbox.pmemd: Program error Makefile:1196: recipe for target 'test.pmemd.amoeba.MPI' failed make[2]: [test.pmemd.amoeba.MPI] Error 1 (ignored) export TESTsander='../../bin/pmemd.amoeba.MPI'; cd amoeba_softcore && ./Run.amoeba_softcore.pmemd -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.amoeba_softcore.pmemd: Program error Makefile:1196: recipe for target 'test.pmemd.amoeba.MPI' failed make[2]: [test.pmemd.amoeba.MPI] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gact_ips && ./Run.ips_sgld -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.ips_sgld: Program error Makefile:973: recipe for target 'test.parallel.pmemd.sgld' failed make[2]: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gact_ips && ./Run.ips_sgldfp -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.ips_sgldfp: Program error Makefile:973: recipe for target 'test.parallel.pmemd.sgld' failed make[2]: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gact_ips && ./Run.ips_sgldg -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.ips_sgldg: Program error Makefile:973: recipe for target 'test.parallel.pmemd.sgld' failed make[2]: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gact_ips && ./Run.ips_sgmdg -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.ips_sgmdg: Program error Makefile:973: recipe for target 'test.parallel.pmemd.sgld' failed make[2]: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna.sgld -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.gbrna.sgld: Program error Makefile:973: recipe for target 'test.parallel.pmemd.sgld' failed make[2]: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna.sgldfp -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.gbrna.sgldfp: Program error Makefile:973: recipe for target 'test.parallel.pmemd.sgld' failed make[2]: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna.sgldg -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.gbrna.sgldg: Program error Makefile:973: recipe for target 'test.parallel.pmemd.sgld' failed make[2]: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna.sgmdg -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.gbrna.sgmdg: Program error Makefile:973: recipe for target 'test.parallel.pmemd.sgld' failed make[2]: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd emap/ && ./Run.emap -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.emap: Program error Makefile:1175: recipe for target 'test.parallel.pmemd.emap' failed make[2]: [test.parallel.pmemd.emap] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd emil/emil_pmemd_gbsa && ./Run.emil EMIL DO_PARALLEL is set: mpirun -np 4 ./Run.emil: Program error Makefile:1120: recipe for target 'test.parallel.emil.pmemd' failed make[2]: [test.parallel.emil.pmemd] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd emil/emil_pmemd_tip3p && ./Run.emil EMIL DO_PARALLEL is set: mpirun -np 4 ./Run.emil: Program error Makefile:1120: recipe for target 'test.parallel.emil.pmemd' failed make[2]: [test.parallel.emil.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI' && cd rem_gb_2rep && ./Run.rem -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.rem: 22: [: -ne: unexpected operator -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.rem: Program error Makefile:722: recipe for target 'test.pmemd.REM' failed make[2]: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI' && cd rem_wat && ./Run.rem -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.rem: 22: [: -lt: unexpected operator -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.rem: Program error Makefile:722: recipe for target 'test.pmemd.REM' failed make[2]: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI' && cd rem_gb_4rep && ./Run.rem -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.rem: 28: [: -ne: unexpected operator -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.rem: Program error Makefile:722: recipe for target 'test.pmemd.REM' failed make[2]: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI' && cd h_rem && ./Run.rem -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.rem: 28: [: -ne: unexpected operator -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.rem: Program error Makefile:722: recipe for target 'test.pmemd.REM' failed make[2]: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI' && cd multid_remd && ./Run.multirem -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.multirem: 28: [: -ne: unexpected operator -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.multirem: Program error Makefile:722: recipe for target 'test.pmemd.REM' failed make[2]: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd rxsgld_4rep && ./Run.rxsgld -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.rxsgld: 32: [: -ne: unexpected operator -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.rxsgld: Program error Makefile:722: recipe for target 'test.pmemd.REM' failed make[2]: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd cnstph_remd/pHREM && ./Run.pHremd -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.pHremd: 20: [: -ne: unexpected operator ./Run.pHremd: 26: [: -eq: unexpected operator -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.pHremd: Program error Makefile:722: recipe for target 'test.pmemd.REM' failed make[2]: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd cnstph_remd/TempRem && ./Run.cnstph_remd -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.cnstph_remd: 25: [: -ne: unexpected operator -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.cnstph_remd: Program error Makefile:722: recipe for target 'test.pmemd.REM' failed make[2]: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd cnstph_remd/Explicit_pHREM && ./Run.pHremd -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- File "", line 1 print // 4 * 4 == ^ SyntaxError: invalid syntax File "", line 1 print and // 4 >= 2 ^ SyntaxError: invalid syntax -------------------------------------------------------------------------- mpirun has detected an attempt to run as root. Running at root is *strongly* discouraged as any mistake (e.g., in defining TMPDIR) or bug can result in catastrophic damage to the OS file system, leaving your system in an unusable state. You can override this protection by adding the --allow-run-as-root option to your cmd line. However, we reiterate our strong advice against doing so - please do so at your own risk. -------------------------------------------------------------------------- ./Run.pHremd: Program error Makefile:722: recipe for target 'test.pmemd.REM' failed make[2]: [test.pmemd.REM] Error 1 (ignored) Finished parallel test suite for Amber 14 at Thu Jun 30 22:54:50 IST 2016. Some tests require 4 threads to run, while some will not run with more than 2. Please run further parallel tests with the appropriate number of processors. See /home/manojiids/amber14/test/README. make[2]: Leaving directory '/home/manojiids/amber14/test' 0 file comparisons passed 0 file comparisons failed 119 tests experienced an error Test log file saved as /home/manojiids/amber14/logs/test_amber_parallel/2016-06-30_22-54-49.log No test diffs to save!