Re: [AMBER] Regarding Force Field Inquiry

From: David A Case <>
Date: Wed, 25 May 2016 07:41:40 -0400

On Wed, May 25, 2016, Vishal Nemaysh wrote:
> I want to know about what kind of Force Field utility used for
> a peptide simulation, which possess only 42 amino acid residues. please
> kindly let me know.

You would use force fields identified as "protein" in Amber, e.g ff14SB or
ff15ipq. For these purposes, "proteins" and "peptides" mean the same thing.

(I'm not sure if this was your question; please try to re-phrase it if this
is not what you were asking....)


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Received on Wed May 25 2016 - 05:00:04 PDT
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