[AMBER] Organic solvent box - Amber do not see the molecule but its atoms

From: Stregone <stregone.protonmail.com>
Date: Tue, 24 May 2016 07:27:40 -0400

Good morning!

I am doing a acetone box. I did find useful information in
- http://archive.ambermd.org/201211/0214.html
- http://archive.ambermd.org/200908/0377.html
However when I watched the but in xleap,
I realised that Amber only see the atoms, but not the molecule.
First, I thought it was something related with topology.
But after check <check X>, it seems all is in its place.
I have been using the pdb and mol2 files from the the project in R.E.DD.B.
I would appreciate any help of suggestion about given issue.
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Received on Tue May 24 2016 - 04:30:02 PDT
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