Re: [AMBER] Regarding joining of two pdb file

From: Bill Ross <>
Date: Tue, 10 May 2016 23:14:34 -0700

This involves fitting the molecules together, which is possible in
xleap, but usually done in other programs, perhaps VMD, in which case
you save the docked molecule as a single pdb and load it into leap.


On 5/10/16 10:53 PM, MOHD HOMAIDUR RAHMAN wrote:
> Dear Amber User's
> I have two pdb file and each pdb file have around 490 RNA residue.
> Now I want to join two pdb file, It is possible to do in AmberTool.
> I have found tutorials about small molecules and 10 bp DNA. But that is not
> solved my problem due to long RNA sequence.
> Could anyone help me to resolve this problem and any suggestion will
> appreciated.
> Thanks
> Rahman
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Received on Tue May 10 2016 - 23:30:03 PDT
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