[AMBER] Analysis of protein-protein interaction

From: James Starlight <jmsstarlight.gmail.com>
Date: Mon, 9 May 2016 12:10:22 +0200

Dear AMBER users!

I am in charge with the analysis of protein-protein assosiation during
several independent md sims calculated for the same system. I would
like interesting to calculate
1* contact maps to get insight about residues important for the assosiation

2* electrostatic surface- as the dynamical property of the receptor
system - to understand whether any differences in it - seen on
different trajectories which helps me make conclusions regarding
importance of the electrostatic forces in my system in general.

Thanks so much for any help with the realization of those steps using
different progs from AMBER TOOLS as well as for any extra advises!


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Received on Mon May 09 2016 - 03:30:05 PDT
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