Have you read the manual? It describes all the prerequisites needed for a molecular structure prior to feeding it to antechamber. You could also just try out and see what the program produces.
________________________________________
From: Brett [brettliu123.163.com]
Sent: 18 April 2016 07:38
To: amber.ambermd.org
Subject: [AMBER] on antechamber
Dear All,
For processing by antechamber, should be the PDB for the ligand with H atoms, or the H atoms of the ligand in the PDB can be omitted?
I am looking forward to getting a reply from you.
Brett
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Received on Mon Apr 18 2016 - 00:00:04 PDT
