Re: [AMBER] Protein-DNA docking

From: Lara rajam <lara.4884.gmail.com>
Date: Tue, 12 Apr 2016 16:56:02 -0400

Thank you


On Tue, Apr 12, 2016 at 4:50 PM, Carlos Simmerling <
carlos.simmerling.gmail.com> wrote:

> you can look in recent work we published on this topic, which discussed use
> of a protein to create the complex.
>
> A human transcription factor in search mode
> Hauser, K., Essuman, B., He, Y., Coutsias, E., Garcia-Diaz, M., Simmerling,
> C., Nucleic Acids Research, Nucl. Acids Res. (08 January 2016) 44 (1):
> 63-74.
> doi: 10.1093/nar/gkv1091
>
>
> On Tue, Apr 12, 2016 at 4:38 PM, Lara rajam <lara.4884.gmail.com> wrote:
>
> > Dear Amber !
> > I would like to do Protein - DNA simulation using AMBER.
> > What is the best way to have the initial starting structure if there are
> no
> > experimental structures,
> > I will be happy to get comments on this
> > thank you
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> >
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Received on Tue Apr 12 2016 - 14:00:07 PDT
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