you can look in recent work we published on this topic, which discussed use
of a protein to create the complex.
A human transcription factor in search mode
Hauser, K., Essuman, B., He, Y., Coutsias, E., Garcia-Diaz, M., Simmerling,
C., Nucleic Acids Research, Nucl. Acids Res. (08 January 2016) 44 (1):
63-74.
doi: 10.1093/nar/gkv1091
On Tue, Apr 12, 2016 at 4:38 PM, Lara rajam <lara.4884.gmail.com> wrote:
> Dear Amber !
> I would like to do Protein - DNA simulation using AMBER.
> What is the best way to have the initial starting structure if there are no
> experimental structures,
> I will be happy to get comments on this
> thank you
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>
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Received on Tue Apr 12 2016 - 14:00:06 PDT
