Re: [AMBER] protein-RNA complex simulation

From: Thomas Cheatham <tec3.utah.edu>
Date: Fri, 11 Mar 2016 23:21:27 -0700 (MST)

> command to remove hydrogens. I got a notice "gap of 5.280009 A between
> VAL_162 and PHE_163

Ah also could be that you have two proteins, one terminates at VAL_162 and
the other starts at PHE_163 and you need TER cards between the two
separate proteins...

(difficult to tell without more information which is why we always request
the exact commands to leap, the inputs, etc. to help us help you!)



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Received on Fri Mar 11 2016 - 22:30:06 PST
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