Hi Daniel,
I run each test forward each component installation, and any test dont work.
I just tried run the specific script, such test_amber_serial.sh an others,
nothing work too.
The complete error message for serial test:
>labime.prion:~/amber14/test> ./test_amber_serial.sh
>Warning: DO_PARALLEL is set to "mpirun -np 2".
This environment variable is being unset for serial testing.
>Traceback (most recent call last):
> File "<stdin>", line 18, in <module>
File
"/home/labime/amber14/lib/python2.7/site-packages/chemistry/__init__.py",
line 14, in <module>
from chemistry import amber, charmm, tinker
> File
"/home/labime/amber14/lib/python2.7/site-packages/chemistry/amber/__init__.py",
line 13, >in <module>
> from chemistry.amber.netcdffiles import use, NetCDFTraj,
NetCDFRestart, HAS_NETCDF
File
"/home/labime/amber14/lib/python2.7/site-packages/chemistry/amber/netcdffiles.py",
line 75, in <module>
from scipy.io.netcdf import netcdf_file as spNetCDFFile
File "/usr/lib64/python2.7/site-packages/scipy/io/__init__.py", line 97,
in <module>
from .matlab import loadmat, savemat, whosmat, byteordercodes
File "/usr/lib64/python2.7/site-packages/scipy/io/matlab/__init__.py",
line 13, in <module>
from .mio import loadmat, savemat, whosmat
File "/usr/lib64/python2.7/site-packages/scipy/io/matlab/mio.py", line
12, in <module>
from .miobase import get_matfile_version, docfiller
File "/usr/lib64/python2.7/site-packages/scipy/io/matlab/miobase.py",
line 22, in <module>
from scipy.misc import doccer
File "/usr/lib64/python2.7/site-packages/scipy/misc/__init__.py", line
51, in <module>
from scipy.special import comb, factorial, factorial2, factorialk
File "/usr/lib64/python2.7/site-packages/scipy/special/__init__.py", line
627, in <module>
from ._ufuncs import *
File "__init__.pxd", line 155, in init scipy.special._ufuncs
(scipy/special/_ufuncs.c:26236)
ValueError: numpy.dtype has the wrong size, try recompiling
--
Wesley Júnio Alves da Conceição
Undergraduate Biophysics Student
Laboratory for Molecular Modelling and Dynamics - Carlos Chagas Filho
Biophysics Institute
Laboratory for Structural Molecular Biology - Pharmacy Faculty
Federal University of Rio de Janeiro
Rio de Janeiro - RJ
Brazil
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Received on Wed Mar 09 2016 - 09:00:05 PST
