You need to load ion parameters to match your water model. 'could not
find vdw for Na+'
A look at the parameter file names should make it an easy guess which
one to load.
Bill
On 3/1/16 3:33 AM, Sreemol G wrote:
> Hello everyone,
> I am doing simulation of RNA (23 nucleotides) in amber. I have followed the
> tutorial given in this website(
> http://ambermd.org/tutorials/basic/tutorial1/section2.htm). While while
> trying to write prmtop and inpcrd files for neutralised system I
> encountered the following error I have pasted as snapshot. can anyone
> please tell me how to rectify it??
>
>
>
>
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Received on Tue Mar 01 2016 - 04:00:08 PST
