Michael Feig has done work on this, I suggest looking at his papers. It is
now a category in CASP so you can look at the recent competition results to
see how well it might work. It is still very challenging to improve poor
models.
On Jan 20, 2016 1:50 AM, "Sushi Shilpa" <sushishilpa.gmail.com> wrote:
> Dear Amber users
>
> I have modelled structure using homology modelling (Swiss model,
> modeller,and Modweb) and the model quality is not so good due to lack of
> good target model. To improve the quality of model, secondary structure,
> loops and Ramachandran plot, I wish to use MD simulation using Amber. I
> appreciate, if could kindly suggest the methodology and references in this
> regard.
>
> Thanks in advance
>
>
>
> Regards,
>
>
> Shilpa T
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Received on Wed Jan 20 2016 - 06:00:05 PST
