Hi
I have calculated the RMSD of all residues of the my protein protein
complex.
using the input
trajin ../05-production1ns.mdcrd
trajin ../05-production2ns.mdcrd
trajin ../05-production3ns.mdcrd
trajin ../05-production4ns.mdcrd
trajin ../05-production5ns.mdcrd
trajin ../05-production6ns.mdcrd
trajin ../05-production7ns.mdcrd
trajin ../05-production8ns.mdcrd
trajin ../05-production9ns.mdcrd
trajin ../05-production10ns.mdcrd
reference ../uv7.crd
rms reference out rmsd_allcpx.plot :1-498
rms reference out rmsd_allrec.plot :1-344
rms reference out rmsd_allLigand.plot :345-498
rms reference out rmsd_bbcpx.plot :1-498.CA,C,N,O
rms reference out rmsd_bbrec.plot :1-344.CA,C,N,O
rms reference out rmsd_bbLigand.plot :345-498.CA,C,N,O
now I want to calculate for selected residues from the receptor, lets say
residues 181-257. Could you please tell me how to change the rmsd input?
Thanks in advance
--
Vertika Gautam
*e-mail address: vartikapisces.gmail.com
<vartikapisces.gmail.com>
vartikapisces.hotmail.com <vartikapisces.hotmail.com>
01112294191*
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Received on Tue Jan 12 2016 - 23:30:04 PST
