Yes. sander and pmemd both use MPI to parallelize the calculation. So if
you look up how to run MPI programs, that will tell you how to run
sander.MPI or pmemd.MPI.
HTH,
Jason
On Mon, Nov 23, 2015 at 5:22 PM, Aishani Prem <aishaniprem.gmail.com> wrote:
> Hi,
> I am running my molecular simulations on a culster and its time
> consuming. I wanted to know if there is a way I can submit these
> simulations to parallel CPU's on the cluster which might help the
> simulations run faster
>
> --
> Thank You and Regards,
> Aishani Chittoor Prem
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>
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Mon Nov 23 2015 - 14:30:06 PST
