Re: [AMBER] How to fix the QM/MM region box size and visualize it

From: Sivanandam M <>
Date: Mon, 23 Nov 2015 18:45:28 +0530

Respected sir,
                     I have a protein-ligand complex inwhich protein has
317 amino acids and ligand has 51 atoms. i am trying to do QM/MM
calculation. In this calculation, i have to fix the QM region of that
ligand with interactions. If anyone help me, how to accurately fix the
dimension of the QM region, and advice me which software can be use to
visualize the QM region box.

Thanks in advance

Research Scholar
Department of Physics
School of Physical Sciences
Periyar University
Salem-636 011
Mobile- 9965582730, 9042066076
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Received on Mon Nov 23 2015 - 05:30:05 PST
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