[AMBER] Putting a harmonic constraint between atoms

From: Debodyuti Dutta <dutta.debodyuti.gmail.com>
Date: Thu, 19 Nov 2015 19:22:16 +0530

Dear amber users, Is there any way to put a harmonic constraint between
two atoms, so that they always tend to move together (subject to the force
applied)? The atoms are not covalently bonded.

 It is easy in Amber to apply constraints in atom or residue position (with
ntr=1, restraint_wt and restraintmask). But that is is not applicable for
my problem. Any help will be very useful. Thanks in advance.

*Debodyuti Dutta*
Research Scholar
Indian Institute of Technology Kharagpur
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Received on Thu Nov 19 2015 - 06:00:03 PST
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