On Thu, Nov 12, 2015, Fabian gmail wrote:
>
> I would like to create different solvent boxes and then run MD with
> them, is there any protocol that describes in detail how to do it
> properly?
Amber doesn't really have tools for this. Try packmol to get the starting
coordinates. Then run MD as you would for a pure solvent.
....dac
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Received on Thu Nov 12 2015 - 11:00:03 PST
