Check out the following paper:
Yildirim, I.,* Chakraborty, D., Disney, M. D., Wales, D. J., and Schatz,
G. C., “Computational Investigation of RNA CUG repeats responsible for
Myotonic Dystrophy 1”, J. Chem. Theory Comput. 11, 4943–4958, 2015 .
It is done for RNA, but the methodology should be the same for DNA, too.
Check out the references, too, where we cite other groups who did study
intinite DNA.
Cheers,
Ilyas Yildirim, Ph.D.
-----------------------------------------------------------
= Department of Chemistry | University of Cambridge =
= Lensfield Road (Room # 380) | Cambridge, UK CB2 1EW =
= Ph.: +44-1223-336-353 | E-mail: iy222.cam.ac.uk =
= Website: http://ilyasyildirim.wordpress.com =
= ------------------------------------------------------- =
=
http://www.linkedin.com/in/yildirimilyas =
=
http://scholar.google.com/citations?user=O6RQCcwAAAAJ =
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On Thu, 12 Nov 2015, Balaji Selvam wrote:
> Dear Amber Users,
>
> I would like to simulated infinite DNA molecule.
>
> I came across similar posts in archives (
> http://archive.ambermd.org/200507/0107.html) although its very old post.
>
> In the post I also found some links however the webpages are not active.
>
> Could you please advice me how to build up the system to simulate infinite
> DNA molecule using AMBER v14.
>
> Thank you,
> Balaji
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> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Nov 12 2015 - 09:00:09 PST
