Hi,
Are you sure no other output is printed (like "Error: ..." messages).
Your input file is seemingly not being processed (otherwise the lines
from the input file would appear in your output like "[trajin
monA_gb_md1_nocut.mdcrd]" etc), and when CPPTRAJ exits without
printing the citation it indicates that an error has occurred (the
citation is not printed to make any error messages more visible).
-Dan
On Thu, Nov 5, 2015 at 2:45 PM, Aishani Prem <aishaniprem.gmail.com> wrote:
> Hello,
> I have been working on the amber B1 tutorial. When I use the cpptraj
> command to generate the rmsd file I get :-
> CPPTRAJ: Trajectory Analysis. V15.00
> ___ ___ ___ ___
> | \/ | \/ | \/ |
> _|_/\_|_/\_|_/\_|_
>
> | Date/time: 11/05/15 13:29:39
> | Available memory: 13178.9 MB
>
> Reading 'monA_vac.prmtop' as Amber Topology
> TIME: Total execution time: 0.0263 seconds.
>
> But my rmsd is not generated. Can anyone tell me what is the problem.
> My input file is :
> trajin monA_gb_md1_nocut.mdcrd
> rms first mass out monA_gb_md1_nocut.rms time 0.1
> and my command is
> $AMBERHOME/bin/cpptraj -p monA_vac.prmtop -i monA_gb_md1_nocut.calc_rms
> I checked the mdcrd and prmtop files and they seem fine.
> --
> Thank You and Regards,
> Aishani Chittoor Prem
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Nov 05 2015 - 14:30:04 PST
