On Wed, Sep 30, 2015 at 7:43 AM, Weinzierl, Robert O J <
r.weinzierl.imperial.ac.uk> wrote:
> Dear all,
>
> I am just trying to install Amber14/AmberTools15 on a new computer running
> on Ubuntu 14.04LTS. I installed all the compilers/libraries recommended in
> the manual. After compiling the serial version I got the following error
> message:
>
> /usr/bin/ld: /home/rojw/amber14/lib/libnetcdff.a(fort-attio.o): relocation
> R_X86_64_PC32 against undefined symbol `strlen@@GLIBC_2.2.5' can not be
> used when making a shared object; recompile with -fPIC
> /usr/bin/ld: final link failed: Bad value
> collect2: error: ld returned 1 exit status
> make[2]: *** [/home/rojw/amber14/lib/libsander.so] Error 1
> make[2]: Leaving directory `/home/rojw/amber14/AmberTools/src/sander'
> make[1]: *** [serial] Error 2
> make[1]: Leaving directory `/home/rojw/amber14/AmberTools/src'
> make: *** [install] Error 2
>
> Any suggestions what is going wrong?
>
This usually happens when you upgrade from AmberTools 14 to AmberTools 15
using "./update_amber --upgrade".
Run "make clean uninstall" and then recompile to fix this.
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Wed Sep 30 2015 - 05:30:06 PDT
