On Tue, Sep 22, 2015, Sidhu, Khushwant (Dr.) wrote:
>
> I'm trying to model a protein-RNA complex and am getting the following error.
> The structure is from crystallography & RNA has a 5' phosphate group.
This comes up a lot. You can search for "5' phosphate" in the archive of the
Amber mailing list, but the bottom line is that we do not have libraries
that have 5' terminal groups that contain a phosphate. You might check at the
R.E.D. site to see if suitable library files are contained there.
I suspect that Amber users are lurking out there who have addressed this
problem. I hope someone will chime in with ideas.
....dac
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Received on Wed Sep 23 2015 - 18:30:03 PDT
