[AMBER] Hoogsteen-Watson Base pair

From: Martina Devi <martinadevi2011.gmail.com>
Date: Wed, 23 Sep 2015 20:32:01 +0530

Dear Amber-Users

I would like to know how to build a base-pair where one base has
watson-crick edge and the other has hoogsten edge.Though I build a base
pair through NAB and it is working fine through the given input:

molecule m;
m = fd_helix( "arna", "ccc", "rna");
putpdb( "a-rna.nab.pdb", m, "-wwpdb");

The above input give a base pair where all the pairs has watson-crick edge.
So is there any input for generating hoogsten edge.

Thanks in advance.

Martina
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Received on Wed Sep 23 2015 - 08:30:03 PDT
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