Hi Amber users,
I've recently downloaded AmberTools15 and followed all the installation
steps succesfully on a RHEL6. But when I try to do
make test
I get the following errors
http://lpaste.net/42814355720372224 (copied
in this link)
The python version that I currently use is 3.4.3 installed with Anaconda
2.1.0 (64-bit) distribution. Also my PYTHONPATH is set to
/usr/local/amber15/lib/python2.7/site-packages:/usr/local/amber/lib/python2.7/site-packages
after I source the $AMBERHOME/amber.sh script.
So what's the python that AmberTools is trying to use? And how do I
manage to add python packages to the AmberTools installation?
I've previously experienced problems with other AmberTools
programs, such as xparmed.py, or mdout_analyzer.py, (see errors here
http://lpaste.net/7336825506265825280 ) in which python modules are
missing; and I don't know how to add them because if I just do conda
install package it will install it in my regular python distribution
(although that the _tkinter that's missing I can't even find it using
conda).
I've a second question also related to python. I've tried to install the
pytraj program on my conda distribution like the Amber Manual suggests:
conda install --force -c pytraj pytraj-dev
And it installs it correctly in my anaconda3 folder. Now if I open the
python interpreter and import pytraj, I get the following error
http://lpaste.net/3868115149562839040 . I don't know if this might be
related to the problems I've reported before? Or it could be an issue
related to the Cython code that's in pytraj? Just a guess based on my
little experience with python.
I'm pretty stuck on this so any guidance on this matter would be
appreciated,
Juan Eiros
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Received on Tue Jul 07 2015 - 11:30:02 PDT
